Scaffold Ga0073579_1191033

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1191033
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34408
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (48.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026155	Metagenome	199	N
F046072	Metagenome	152	Y
F054781	Metagenome / Metatranscriptome	139	N
F105211	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_119103314	F105211	AGGAG	MSNIYIKLVANHPVLKQTIMDVMQMKKEQGDNTPLFVAPKNEERPDKNWTKGVNIPQEANGWYSQAGFGATTDDGQATGGINVSLKPNDASKSSTGGSGQPAMGGYKKPFPKTGTYGSYKR*
Ga0073579_119103321	F026155	N/A	VYCILWMRNDKWELFTNEIWDTEKEATQYANRGNFKKKDKWKVVLYDKKYYK*
Ga0073579_11910334	F046072	N/A	MKQKYDPHIRVRFDLFDDPQFRTIPNKHKAHCLCVLICLLKFVNNKTLQCYPRKATISSMTGLSYSTIYRATVWLIRAKIVSKKRLPSTLLYTINPRYIVGYRESGHRDNRIGQRERTELSAGSLLIERNIKQTTITNLIKEVADKGGDQSKIVSVLSNLPRKTLIKAIEDNDNIYYSKLALAEQDRNGVKLVDIPRNIVDNVRKKTHFGYQNVINKRKDKIARQTKTESFLSELNKKKHT*
Ga0073579_119103349	F054781	N/A	MWDYIQDDLTSVVLIDEKTNTLTIKIYGLGSKDSAETFAQYTMSLLQFDYNSTGYSMPSTMIH*