Scaffold Ga0073579_1190150

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1190150
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 279390
• Total Scaffold Genes: 324
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 154 (47.53%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016672	Metagenome / Metatranscriptome	245	N
F022671	Metagenome / Metatranscriptome	213	Y
F056583	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_1190150142	F022671	GAG	MVTKNKITDFLHAFFVIKKEDFYLSNKAIIHDFKKNPGLYHIAKKRHIGVEEVYNIVKTHDINVLNTNIIKLMEFK*
Ga0073579_1190150213	F016672	N/A	MMFNTKKILLLLIIFMPFINVNASDGRTMTDKLTCYNYEERIVFMLDLKKDNEKLNNMSLEVVKRTENSIEFVGPDLLVKFDSLNFVLNVIPTRASEALTMECTLN*
Ga0073579_11901506	F056583	N/A	MKYYLLIFIIVLSSCSSRMSGQYNFPMTINTYDSNKEEVLADCNLYSAETRLSFTTPQKINYQANCGPINIVCKSGTKTGEFGLLPNPEEEIEVNTILSTGAGIIFDRLVDSTTPFGMFVRYTNAFDNSTCLIPKEINIILD*