Scaffold Ga0073579_1170095

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1170095
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21580
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (32.26%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043683	Metagenome	156	Y
F052261	Metagenome	143	Y
F077941	Metagenome	117	N
F106107	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_11700952	F052261	N/A	MEEPSVSCVFDERAIRALHSAVSYTLEKWTGQGEIDQEELFCLKPFLQGAIFEFDFGRKSK*
Ga0073579_117009522	F106107	GAG	MTLSVIEQTNFRNYIVHRLMLEIERLIPEYLYTNQYLIEDIEDKGYDTVEEAYVDDASNIKFTWPPDPYGRS*
Ga0073579_117009526	F077941	N/A	MTTVKLADLFIHFVEQLLIQHEAEDPLRVYQLVADRCQAQVNRMTALDPDRNK*
Ga0073579_117009528	F043683	GAGG	MNLNQEQLNDMRAALVFYMQRNISIKNPRYQEYEAILKELNKTLQSI*