Scaffold Ga0073579_1095335

Overview

Basic Information

• Taxon OID: 3300005239
• Scaffold ID: Ga0073579_1095335
• Source Dataset Name: Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20781
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (43.75%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Environmental Genome Shotgun Sequencing: Ocean Microbial Populations From The Gulf Of Maine

Source Dataset Sampling Location

• Location Name: Gulf of Maine, USA
• Coordinates
  • Lat. (^o): 43.2393
  • Long. (^o): -68.368612

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009839	Metagenome / Metatranscriptome	312	N
F100975	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073579_109533514	F009839	N/A	MTVKFGCFHTVYENKKATEFILQEFRKYHPDAPYTICCDGGVDYSDLCEKYNVNYVHSYMRIGRRNAGDPSGIYGFTKDESLHWIHMFREAARHVRDNGGTHMIMMEDDVLTQGEVKINPIWECAGFEVPENKISPKMLEFISDKYGANPNVDWYGAGGGSIYNIETFLNNYHKIYDFIDFDFNNILENMDHRFGWLDLYMQIAYFVIGKHYSINTNLTEVWKTPNFRESDFTLVHAYKELY*
Ga0073579_109533517	F100975	GGAGG	MKRKIIFWVENKPYQTFSYIYAGMKRAFEKLGCETYWFSDQSFPSVSEFDYSNCIFFIDNQGPLDWNVPIIDSGIYFAYDKFTNVNKYLDRVKCLINYRVAEFKHPILDNDRYVEVEKGVIFDTQTPEPYNVVHFHYATNLLPEEIDLNWAKKERNNEYNFVGTIHDPRPNCEPIHQQFIEIVKEKQIPFNHYNPNINPATDEEHVKILQDSMFVPDFRPAEQKVQRYVADRIMKAISYGCLVVSDCHYAKDFIDKDLLTSENAQEIFDLGMENQNNIELISHLMEIIKRDHTYMNRCKGILSIVEEVE*