Scaffold Ga0069001_10158572

Overview

Basic Information

• Taxon OID: 3300005215
• Scaffold ID: Ga0069001_10158572
• Source Dataset Name: Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Tolay_CordB_D2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 621
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → Synechococcus virus SCAM9 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location

• Location Name: USA: San Francisco Bay, California
• Coordinates
  • Lat. (^o): 38.15012
  • Long. (^o): -122.438774

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032961	Metagenome / Metatranscriptome	178	N
F034111	Metagenome / Metatranscriptome	175	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0069001_101585721	F034111	N/A	MLELTLASLLNTMSADFCALMETEKDIVKATFLAYSMANKQYGPDNVIKIITDASPLEIKSLAVSSVITKCPNKL*
Ga0069001_101585722	F032961	N/A	MSLSERGKIYKYVWQCAYQRRYFAMCKGDWDLYNREHETVLMCLNIAIWTEFDTEKPKYFTKYKE*