Scaffold Ga0068997_10080601

Overview

Basic Information

• Taxon OID: 3300005204
• Scaffold ID: Ga0068997_10080601
• Source Dataset Name: Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 676
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location

• Location Name: USA: San Francisco Bay, California
• Coordinates
  • Lat. (^o): 38.000706
  • Long. (^o): -121.624306

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051769	Metagenome / Metatranscriptome	143	Y
F095084	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068997_100806012	F051769	N/A	MSAYAASGLVAGAVLAMAGFGLGLFLLGGRRSTPLLVARCPIHGIAYDTELEVCPDCAKTDAAGGKRGAR*
Ga0068997_100806013	F095084	GAG	MPRLREDRRGGRKERRAMSGTPALFCRTCNTFREIEDWHERGEAFVIALGPCGHEIRRSAGVEWPSHNAAA*