NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0072940_1262873

Scaffold Ga0072940_1262873


Overview

Basic Information
Taxon OID3300005200 Open in IMG/M
Scaffold IDGa0072940_1262873 Open in IMG/M
Source Dataset NameNasutitermes gut metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Queensland
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)530
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Insecta → Digestive System → Unclassified → Unclassified → Termite Gut → Termite Gut Microbial Communities From Australia

Source Dataset Sampling Location
Location NameMurphy's Creek, Queensland, Australia
CoordinatesLat. (o)-27.45Long. (o)152.04Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028537Metagenome191Y
F077441Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0072940_12628731F077441N/AMAESLNILKTVVFRILKEDLGKRKLCVRFVTHSLTPEQREDRVTFCQDIAKADADFFLTKLLREMRSGALPMTPKQS
Ga0072940_12628732F028537N/AMDAITFCFKVGLFATETLVLAQKTYGNEDLNRSNFLGGILDFETEGSW*

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