Scaffold Ga0073163_1019044

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0073163_1019044

Scaffold Ga0073163_1019044

Overview

Basic Information
Taxon OID	3300005195 Open in IMG/M
Scaffold ID	Ga0073163_1019044 Open in IMG/M
Source Dataset Name	E2 T8
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Alicante
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	583
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Mallorca 2014 E2

Source Dataset Sampling Location
Location Name	Salinas de Campos (Mallorca)
Coordinates	Lat. (^o)	39.338015	Long. (^o)	3.051796	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F065465	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073163_10190441	F065465	AGGA	MTEEITVVCECDVLEEARSMGYRRYADMPAADIVAAWPVHYTEHGSWDRHIEPTLRCLAGYGDRGHGTYQYRQDVALIQDGDEADMPADAIILDSSHLLDDIIVSWQDGAHTAVTDTLRQSDEYSLEDIQR*

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