Scaffold Ga0066676_10001871

Overview

Basic Information

• Taxon OID: 3300005186
• Scaffold ID: Ga0066676_10001871
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8768
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006999	Metagenome / Metatranscriptome	360	Y
F040281	Metagenome / Metatranscriptome	162	Y
F078484	Metagenome	116	Y
F104656	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066676_1000187110	F006999	GGA	MPALLEADEKETMLQALGQFEQARRSTTPCEVSNNACQTREIWLAQQAAQTADQYLNTPDAKESQWRLVAQSIIKYSQARSEAYAAYVRARNQDPDVAEKAYHSIVDPLEQDFVGQLKTTLRSDENSREIAQRFGLVDF*
Ga0066676_1000187111	F078484	GGAGG	MNGKFLLFGEDEIENSLMRFVDRKVGEQRRDERRLAEQRTTKHRFQARKSCVADARSYRIARRLPAPGVARFDWKALIPTRRTYLIGIGWLKKLRNDHLKHWVNAKQVS*
Ga0066676_100018717	F040281	GAG	LLAATALAALSGCQSAAEKQRPEAEAQSGDLANCAKIRVVSGGCRGNSRFTEVYVDNMHKNQAVRATVRKHSQEGDDDTDYAIAEGGQLFIGCGGGGTSFVVIGCKVLKGEAEKE*
Ga0066676_100018719	F104656	GGA	MGNDAARMSITMKNPRFPALSFFSALLIGIGWTLIAIGILVLVLCAISLFSSSATDFGAVLTTAMTFGLASLALVLIGLFTVTGGESVRVFLAIEANTHAWTAVVKRPE*