Scaffold Ga0066678_10053768

Overview

Basic Information

• Taxon OID: 3300005181
• Scaffold ID: Ga0066678_10053768
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2304
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002553	Metagenome / Metatranscriptome	549	Y
F003416	Metagenome / Metatranscriptome	488	Y
F063048	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066678_100537682	F063048	N/A	MRRAEGCQRSSDYERLDMTAAELTERKSVAKGESVPAVEAAIPVDNPVSKNN*
Ga0066678_100537683	F002553	AGG	MHLIQFREIMRDAEVAYAIHPIVRKYLLTVKDTTKALIACGVPRAANVAQITSAWI*
Ga0066678_100537684	F003416	AGGA	VSRFIDHAHESLTLASSQNEESDFAAERRWENEGGNPGQVQQLLGDDRKEDAITGPAQGALKAFCYQG*