Scaffold Ga0066685_10000368

Overview

Basic Information

• Taxon OID: 3300005180
• Scaffold ID: Ga0066685_10000368
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15029
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013098	Metagenome / Metatranscriptome	274	Y
F014275	Metagenome / Metatranscriptome	264	Y
F016870	Metagenome / Metatranscriptome	244	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066685_100003685	F014275	AGGAGG	MHRLVVRLDRAGAGNHVSRWKRQMDQSIRRAVRASRRAIQATNHSASPHKAERMALKMKKAVVKAAMGL*
Ga0066685_100003687	F016870	GGAGG	MYDRTIDRVSDSASEFLVQFYLHAPKLSVSVLLAAWLVLFFGALWYFVLLPATSNNLVNGSFEARLVGWGTGWLEDFPAYRGAARLNQYLATRNPQTGQLAVADWHSDPTEHRPGGRFALLIEHRSDKQTEVYSTLAQRIRVQPRTGYNVRFWAKVDRMDHDGDLWLSPNGSSVSWDEPRIEVSGVGKGWQFYRLDFNSGDRTDLDIRFVAEGPLKAWVDDVVVSRVPAGETWVEKVGSLVRSAWTILR*
Ga0066685_100003688	F013098	N/A	MRLAWLVAVSAAVITLGGCSTAPFLGYRNGPVTLYIGDVRHVCAAGGSSNRGCTMRYPNGRVEVYCADGDYECLAHELRHIVDPMWEHDLDQRSVSTR*