Scaffold Ga0066684_10022184

Overview

Basic Information

• Taxon OID: 3300005179
• Scaffold ID: Ga0066684_10022184
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3325
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001161	Metagenome / Metatranscriptome	761	Y
F010862	Metagenome / Metatranscriptome	298	Y
F035516	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066684_100221843	F001161	GGCGG	MPKENNGITFEGCEPSTIFREFAAECLELAQTAPSAEKNALYLKMASVWHEMAQRWERKS
Ga0066684_100221845	F035516	GGGGG	MKRNIFALFGAVAVLLTATAALTLSRGTPFATGIGTLKCYDVGAIEKPCDRRPLSVRHARLD*
Ga0066684_100221846	F010862	AGG	MNRLLIVGILIISTAPLFAQAQQPNAAELAQKVVSIISGDKAKTQTYCQILDLSDELDQADQQKDREKAEELSQKINELQKKLGPEYLVLLKATEHVDTNSKDGQEIVSNFVKLDNFCGQR*