Basic Information | |
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Taxon OID | 3300005178 Open in IMG/M |
Scaffold ID | Ga0066688_10179290 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1338 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California: Angelo Coastal Reserve | |||||||
Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F011803 | Metagenome / Metatranscriptome | 287 | Y |
F042033 | Metagenome / Metatranscriptome | 159 | Y |
F044745 | Metagenome / Metatranscriptome | 154 | Y |
F070583 | Metagenome / Metatranscriptome | 123 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0066688_101792901 | F070583 | AGGAG | MNDESRVLVRQGARELDRQETEQVSGGLRTLTACTWDPDLGGRDGDGPPEC* |
Ga0066688_101792902 | F042033 | GGA | MNNRVLVRTGARSLSAEEMERVGGGLHTETVCTVPTSVCPNKDGDASIGECGPVC* |
Ga0066688_101792903 | F044745 | AGGAG | MKDQNRVLARKGARDLNEQEVEMVAGGLRTLTACTLAAAGTLDGDTFHSECGSPDQ* |
Ga0066688_101792904 | F011803 | AGGAG | MNDNKRVLIRRGARELTPTETDLINGGFRTLSLCSSSPSPDGDQHIGEVGC* |
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