Basic Information | |
---|---|
Taxon OID | 3300005175 Open in IMG/M |
Scaffold ID | Ga0066673_10049329 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2115 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: California: Angelo Coastal Reserve | |||||||
Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001353 | Metagenome / Metatranscriptome | 717 | Y |
F016743 | Metagenome / Metatranscriptome | 245 | Y |
F016789 | Metagenome / Metatranscriptome | 244 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0066673_100493291 | F016789 | GGAGG | MLATNWQELYEDAIFEINPDKLTSCIEEAEQAIAQRESFVDITQAERHRLADARSV |
Ga0066673_100493293 | F001353 | N/A | MADAKNSPSPEILYPEWQNEYQVALLELDRKKLLERVKAAETAIFNRLQAISHSSDAHAERQAIEDALASLRVLKRDNLGFPDWEKK* |
Ga0066673_100493295 | F016743 | N/A | REHWMRLCVEAADGQDSKRLLELISEIDCLVHEKEMRIRNVRREASRYVIEAAEKRHPSR |
⦗Top⦘ |