Scaffold Ga0066680_10268176

Overview

Basic Information

• Taxon OID: 3300005174
• Scaffold ID: Ga0066680_10268176
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1087
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005164	Metagenome / Metatranscriptome	410	Y
F043330	Metagenome	156	Y
F077655	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066680_102681761	F043330	N/A	RLEQKAMTVGSVYGGADMDDPQELLKIAQHHCQAILTIIDQLTEKKSKTELRLLSQRLQRLAFHAAPTSRDG*
Ga0066680_102681762	F005164	GAG	MLTNFRVSDRVEDNKTHKRGRITFVFSKLEFRGEFIEVLFDGRDEVLAIPTDSVRKVSTRQS*
Ga0066680_102681763	F077655	AGGA	MDVERVEGATMDYTKLTLAELRNGISDTKSAIHRCKEALDNLRQPKTVGLQAMADAITHLLPRLEQDLKALEKAYIAKSVSRGQQ*