Scaffold Ga0071327_1189761

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0071327_1189761

Scaffold Ga0071327_1189761

Overview

Basic Information
Taxon OID	3300005170 Open in IMG/M
Scaffold ID	Ga0071327_1189761 Open in IMG/M
Source Dataset Name	Worm MetaG Olavius vacuus BAHAMAS.1 (version 1)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1143
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location Name	Germany: Marburg
Coordinates	Lat. (^o)	50.8	Long. (^o)	8.81	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019445	Metagenome	229	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0071327_11897611	F019445	N/A	LPNISIRGIKNPTDIAAGRTCLYVCDTRSVAIWRVKAADGKVDQWLSGVRAVSVSVTSEEKLVLLVWVDKQGSDEECNLTLYGEIQIYSRGAVKETVIELSCDITTPRCVVMTTKKTFIVSYGSEWHEMNRVCEVDMTGRMLKAFGSTPGNGVGQLSEPLHVLDDEEGIIVADTHNHRVLLLNKQLMLQRVLVTWHPQSPDDVPFKLHYDSHSGNLLVGWYNGHLNIYQLRARIC*

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