Scaffold Ga0066810_10009353

Overview

Basic Information

• Taxon OID: 3300005169
• Scaffold ID: Ga0066810_10009353
• Source Dataset Name: Soil and rhizosphere microbial communities from Laval, Canada - mgHPA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1411
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location

• Location Name: Laval, Canada
• Coordinates
  • Lat. (^o): 45.54
  • Long. (^o): -73.72

Associated Families

Family	Category	Number of Sequences	3D Structure?
F089448	Metagenome	109	N
F095709	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066810_100093531	F095709	AGGGGG	MPKVSTRHVQRRIAELDAQYTVAQPRPGRFVRQALALIVLVIIAAAAFSSGHRTVSDSVQLTLKQGPTTPKRQLSDAEAQAKWNAMWGAASTGFKSGE*
Ga0066810_100093532	F089448	AGG	MPCGEQPRPDSKAASEVMDALKNAALLATSFGFLATFAMTVAMPAFAAEREYGDDAPSLTFKGPLAPLPLSPAQIKLVKKAIADSLADPASASFGRSYRAGKSDQDELIVCGYVNGKSFVGMFATPQGGSIEFLPIRVAQTEEEQPSVREYCRARGIYVPE*