Scaffold Ga0066672_10000052

Overview

Basic Information

• Taxon OID: 3300005167
• Scaffold ID: Ga0066672_10000052
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22337
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005778	Metagenome / Metatranscriptome	390	Y
F045018	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066672_1000005215	F045018	AGGAGG	MSGHRCCPSECDPRAVQRSLYRHALNALELASRSGCASQDARELAERCAQMLRAAESREEHLVERR*
Ga0066672_1000005218	F005778	N/A	MQVSQVAYDRFVLELPPADASWRPLADPEVLAETAAWLWDFGPNPLIAVVGVEGAAPKWLAAWNPRGVRWAPAGASSGAAVTLAKRTDLERFLSEGAPHERTVLLWPRVSEAKTFEALALGNEAAWLKTVDGHAKIQRAGEVFEVHQVNG*