Scaffold Ga0066808_1002239

Overview

Basic Information

• Taxon OID: 3300005159
• Scaffold ID: Ga0066808_1002239
• Source Dataset Name: Soil and rhizosphere microbial communities from Laval, Canada - mgLPB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1489
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location

• Location Name: Laval, Canada
• Coordinates
  • Lat. (^o): 45.54
  • Long. (^o): -73.72

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007651	Metagenome / Metatranscriptome	347	N
F054450	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066808_10022391	F007651	N/A	MSNDLNELIARKDKLEGELNHELSADYNELMKKMSESFRDMHENSVQYYKQKANEQLDKMEKNIQSGNKLSAINEKLLADTYLSLATTI*
Ga0066808_10022392	F054450	N/A	MHKFFYGNNHRTNKPKPTPTLRSVNISKEQLRDFRNLLSDPRTTRDI