Scaffold Ga0072501_1204455

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0072501_1204455

Scaffold Ga0072501_1204455

Overview

Basic Information
Taxon OID	3300005094 Open in IMG/M
Scaffold ID	Ga0072501_1204455 Open in IMG/M
Source Dataset Name	Ion Torrent S massa
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Salk Institute
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	574
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Marine Benthic Sponge Stylissa Massa Associated → Stylissa Massa Endosymbiont Microbial Communities From Guam

Source Dataset Sampling Location
Location Name	Guam
Coordinates	Lat. (^o)	13.4388546	Long. (^o)	144.8224773	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000999	Metagenome	809	Y
F004618	Metagenome	430	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0072501_12044551	F000999	AGG	MNIQEEEKSDIIVSWYAKKYNKTIRRIGTLNKEGCRVWEDYKGNKLMCFWDPVIERYTTCINP
Ga0072501_12044552	F004618	N/A	MRERDEKITLKDCREQLTEWARDLVDKEIRRRPEGLKLKQLEELKRHSIDTVMESGTPEDLLRALDATTKKIGIAWVVDTSKIKQIASQ*

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