Scaffold Ga0062594_100004647

Overview

Basic Information

• Taxon OID: 3300005093
• Scaffold ID: Ga0062594_100004647
• Source Dataset Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4132
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella → Stigmatella aurantiaca (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.4
  • Long. (^o): -85.37
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067717	Metagenome / Metatranscriptome	125	Y
F094205	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0062594_1000046473	F067717	GAG	MRTRGVLLAWMWTVLSISLAIGSTVKMQPLRRESDALLLRSRAHADAFASSFDGQFADQQLDTFQQRRDVVSRVQSWQRLQLLGALGTFAGLFAVWLLWMLGRLHADLAMAEPHSERGSATT*
Ga0062594_1000046475	F094205	GGA	VVAAGCAHETYQPDPVRVEAPPGQVFEDCDLGDGSSVPSDFPKGSLAPTGSSEHALGCGLSSQLNALGEPSLFPLPRSAEVYRVLWLRSGAHPVSVRFERQGDAGQLRGAQTGGKGLGDPGDLLEESSAFASPAQVQELVARIEATHLWGDPAPAAKLPSIESGSLWVFEGARGGQYRVRILQRDALAQDPAFNALGRALLSASGLHVQGGVY*