Scaffold Ga0071347_1006978

Overview

Basic Information

• Taxon OID: 3300005073
• Scaffold ID: Ga0071347_1006978
• Source Dataset Name: Cellulose enrichment metagenome from thermal spring in Terrace, British Columbia, Canada
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Leibniz Institute
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3486
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Alkaline → Sediment → Cellulose Enrichment Metagenome From Thermal Spring In Terrace, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Terrace, B.C. Canada
• Coordinates
  • Lat. (^o): 54.358506
  • Long. (^o): -128.541159

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038537	Metagenome	165	Y
F102093	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0071347_10069782	F102093	N/A	VPAKEKRKIMKHGTSGVIAIPKPYRDYHNLTPGKTVTILYDSLLLIIPKNLGKLLHEKATLIDELLGQSVEAPTQ*
Ga0071347_10069783	F038537	AGGAG	MHTSVYVWRDLYPLVKRFCREHGVGFNEVVNRAVSQFLGACNIEELRLKARLAALLKEEAELRRVSVCMLRSGSYLPGYVQRVLREPGRSLAHLPDPQRPLKALNPKEERVFRKIAARREQIAREIAEIEEQLLRKVRPFRLKPDLHSSQSRRCDKDKFEGGEKADAC*