Scaffold Ga0071350_1032509

Overview

Basic Information

• Taxon OID: 3300005069
• Scaffold ID: Ga0071350_1032509
• Source Dataset Name: Metagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1392
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.611214
  • Long. (^o): 163.119356

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008991	Metagenome / Metatranscriptome	324	N
F010534	Metagenome / Metatranscriptome	302	N
F017436	Metagenome / Metatranscriptome	240	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0071350_10325091	F010534	N/A	MSDKIEEKEKAIMNLIDLEIKKALKDQASRLEILQDRIREAIDVSATEHSQGIKQVMIFVTKAHVQAWIASLKHKVDTAGDCEICDLEKILGEESLEIAEAVKVALNNRNEETRNRVLGGLLEETTTKIEALSVRASQAPQP*
Ga0071350_10325092	F008991	N/A	MNLTVKITEQVEKKLGAVLKGKYDNRTIWMYYKVSLQMLRDIIEDLIACHHTTHPLTEKDLYYEQNKVQITDWIQWIQNRTSSDKLVDLDRLLSKLIKDKAENLVEALTEENPSDRMTTLSTLQMAVQMALFTEVQQLLKSPTVIQLYEENGWTI*
Ga0071350_10325093	F017436	GAGG	MDGQYRKMFTETVITVQRLSVSAAVFTVTERRNNIVPQKTTIRCRAVVKMMINEIKDDITTLSRDSDRYKLKRIQLALYILLSQALSIESSNERYKELKDMYYFMDRLKTTTFDEWKNFLITGSTEFFDNRF*