Scaffold Ga0071350_1022265

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0071350_1022265

Scaffold Ga0071350_1022265

Overview

Basic Information
Taxon OID	3300005069 Open in IMG/M
Scaffold ID	Ga0071350_1022265 Open in IMG/M
Source Dataset Name	Metagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1609
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Fryxell, Antarctica
Coordinates	Lat. (^o)	-77.611214	Long. (^o)	163.119356	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0071350_10222653	F001176	GAG	MSNNGTGMDTPPNNQPSGAVTSQEATRKNPSQGKFKSGFSGPKPPTKIDRNKHGIRRETIIGQKKTKPKKV*
Ga0071350_10222654	F001280	AGCAG	MFHLRMAQDSETTVSNMCVECGCESLGSETGIANIPGGILDVSRDGEAGLTLNMTATPEQRENFINE*

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