Scaffold Ga0071350_1000113

Overview

Basic Information

• Taxon OID: 3300005069
• Scaffold ID: Ga0071350_1000113
• Source Dataset Name: Metagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11567
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (39.13%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.611214
  • Long. (^o): 163.119356

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039102	Metagenome / Metatranscriptome	164	N
F041008	Metagenome / Metatranscriptome	160	N
F065414	Metagenome / Metatranscriptome	127	N
F073063	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0071350_10001131	F073063	N/A	MTSLMQDLSEVNNIATRDEYWMAFHERNLEAKKSRYIHGPMVDNTGAIIQFINLQPAYSPGAGEVFGGIRISLIDPEKIPNYVDKYEGSIRAHDRFQLEEHLIRANHPGGLNETLTDEDFGITMAWGSLSPTGLKMSPSSRGEGPIWYGIFPTLIELINVSHDPSNPGNWVHVINCYVNLINKLGRRSYLRQHP
Ga0071350_100011314	F065414	N/A	MSEPDIVINLSNLEELNILKARGLKKELLSIIRNRAYRQLYKILNKIPMSKDEEDNKERYKLMFKLLKRIKAIEPSDNLSLGNYIVSRNGVQ*
Ga0071350_100011323	F039102	N/A	DCTESKETIAQAAIRIYDLKREIIKVDPTWRVREPYNYYVHRILSLLDGVNTRENPNIQNNKELHLKLLHETKINRKIDPSWRLNVPRLVSFLKETSEPLCLSEEKPIETEET*
Ga0071350_10001138	F041008	N/A	MSSKNEAEMARALNRLTISDIEEGYRVPVHRKRQEISAMFAENKYNDPEVWQALMDYDILLGELLQRYEEVENVIEHLFEHYLTSKYSQTMRIPLKNTKSIPNDKNYFQTKLEDVLEQRASIEKNKLTIALHSVRNTIERELRIVGDYNMITLYKIDNELLNLKMMYEYLIENFKANVTAKR*