Scaffold Ga0068511_1015945

Overview

Basic Information

• Taxon OID: 3300005057
• Scaffold ID: Ga0068511_1015945
• Source Dataset Name: Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1050
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: unclassified Hyphomonas → Hyphomonas sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location

• Location Name: East Sea, Korea
• Coordinates
  • Lat. (^o): 37.0
  • Long. (^o): 131.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002445	Metagenome	558	Y
F010922	Metagenome / Metatranscriptome	297	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068511_10159452	F002445	GAG	MTTSGCRSRHTTMSTGKPKICPECKGNGYLRTEMQTIVQCLTCWSEGEIDETIWARNYDPIIPDELQSTQKDD*
Ga0068511_10159453	F010922	N/A	LANNDVIHLIEQNKEPEQKLWIAVLAKAFDDAFYSTDQRAALEALSWIKHGSDFNYVCGLAGRDPNYVRKRMLDKVIAREASILMEHKRIKQGVDNVIKLKLKKRGPVPGTQKRVYDYKWLPKQTHDYVDR*