Scaffold Ga0068511_1003708

Overview

Basic Information

• Taxon OID: 3300005057
• Scaffold ID: Ga0068511_1003708
• Source Dataset Name: Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1751
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location

• Location Name: East Sea, Korea
• Coordinates
  • Lat. (^o): 37.0
  • Long. (^o): 131.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053965	Metagenome / Metatranscriptome	140	N
F077161	Metagenome / Metatranscriptome	117	N
F090238	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068511_10037081	F053965	N/A	YNVLWNCGGYGRTMGKLADAIKAYKIAPINSPAEREAKEIIIQITESQWWKDNVGREFKMPKKYDNKKQQAIFTEPQFVFIDNFIFGRHEFCENCRLYKGLLTYTNGQMVYAKPHVT*
Ga0068511_10037082	F077161	GGA	MRNLTLPEIQARFDRHAKLHRFEVDKLFEKVKHKPFNEMQYRYLEIGIRHQFIYDIETSDFDPEQNFIICYCGILRDIVTEKIEHVQDSITKSDIKKAVSQSTFDFDKRLLTTLSHNMKQAHHVVGHYSTKFDNPYFRSRCLLTNQQDLIPGYGYQFYGDTWRMMKSTMKAKRNTLKNFIRQTTGNDEKTFVDLKYWYITHFKDHKLWKKSMDYIIDHCVKDVRMTYEGLKRAELFNNIGRAKA*
Ga0068511_10037083	F090238	AGGAG	MRIHLEEGDEAHAEFHTHDGTTEIWLGGHLTIWGLFDTLVHEALHEAIEDHTDHPTTEKQDHWVIQRLCF*