Scaffold Ga0068511_1002513

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068511_1002513

Scaffold Ga0068511_1002513

Overview

Basic Information
Taxon OID	3300005057 Open in IMG/M
Scaffold ID	Ga0068511_1002513 Open in IMG/M
Source Dataset Name	Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-0.2um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2008
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location
Location Name	East Sea, Korea
Coordinates	Lat. (^o)	37.0	Long. (^o)	131.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011190	Metagenome / Metatranscriptome	294	Y
F019751	Metagenome / Metatranscriptome	228	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068511_10025132	F011190	GAGG	MKLLDGFINGLKKSFSGKDYLREINTCRRCGKPCFFDSCLKCETDEAYRGWERTGKL*
Ga0068511_10025133	F019751	N/A	MTRTRGPDLSKEFHDYIFNQWMFFSENAYGIANKINKDTELMSKFGKTSPAGVHYHIKQIEKDLENSISEDAMDTYIGEFMRARTGFEHDVADIQTMMSHEKEKGLDDMDKELYLKMARFRHEIKLDSFKMLQDSALPLQVKKLKMEREKLRPAKPMPKVEDHGVSQ*

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