Scaffold Ga0068511_1001538

Overview

Basic Information

• Taxon OID: 3300005057
• Scaffold ID: Ga0068511_1001538
• Source Dataset Name: Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2362
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location

• Location Name: East Sea, Korea
• Coordinates
  • Lat. (^o): 37.0
  • Long. (^o): 131.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024093	Metagenome / Metatranscriptome	207	Y
F033254	Metagenome / Metatranscriptome	178	Y
F035957	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068511_10015384	F033254	N/A	MRKFKHEKLWSFADEHVIDGMIYSHDIDKWVTVEEYTDVYYGTL*
Ga0068511_10015387	F035957	N/A	MELAMSNKPRYYDDLTLEEMFECHDHTYMMADDNRAYENGRRQRDIMYAKVEEQGGWTKEMVDLYNKYAPKDDMFQLDYEFLKLANK*
Ga0068511_10015389	F024093	N/A	MAVIKQMNIVAEEIATDIIEEIYKQSDWQVGQFLPKDAESPIINDTHSYLMRLVARHIANKLDVTTNKYYDE*