NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0071328_137436

Scaffold Ga0071328_137436


Overview

Basic Information
Taxon OID3300005045 Open in IMG/M
Scaffold IDGa0071328_137436 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Fox Tunnel, Fairbanks, Alaska, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Chicago
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2100
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Fox Tunnel, Fairbanks, Alaska, Usa

Source Dataset Sampling Location
Location NameFairbanks, Alaska, USA
CoordinatesLat. (o)64.953Long. (o)-147.615Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061879Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0071328_1374364F061879N/AMSQGIQRIDARNEQLVDSNNNNLMINIRAPDNWNSGIVSQTVAKLNWRLNGLTATDDDLSGFFIVVNLPSLANFALPLGQKTGLLSWIISHYATINNESDVTLTDGSSGHLYSISVSTDQLHRLNAPIDKGFDGVMITTKQQGGTYIILYAAQHGRIGEFKDTFTKILHSVSFSKSGLTAPVD*

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