Scaffold Ga0071351_1028614

Overview

Basic Information

• Taxon OID: 3300005044
• Scaffold ID: Ga0071351_1028614
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0048
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1953
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.236
  • Depth (m): 2.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041008	Metagenome / Metatranscriptome	160	N
F046173	Metagenome / Metatranscriptome	151	N
F057882	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0071351_10286141	F041008	N/A	PVRRKRQEISDMLAENRYNDPEVWQALMDYDILLGELLQRYEEVENVMEHLFEYYLTSEYSQKLRISLRGAKPVTNDRLHFQNKLEEVLEQRSSVEKNKSVIALHSVTHTVERELRVVGDYNMVTLYKIDNELLNLKMMYEYLIENFNPHVVTKG*
Ga0071351_10286142	F046173	GAG	MLSLKDREIYEIIIVEIENYKSSDHDKMSKRINYAAKSPALDTILNNIFLKTAMINLELKYYYEEVIGVSKYILEQYLTGKSIGVQLYIKEIDTFYKEKLIGRLNKLKDTIRSDIPIKISEIQETHQRIRKDQDKLNKMKQDPQYNNMQQWGIQLSLERIIEIDSKLINLTKLLNYITEKQKEQE*
Ga0071351_10286145	F057882	GGA	MSCGDNLKEFDHPEYGILDPSQVRELRDELTRGFIDSIGSLSNHLNEEETLDIKDQTTRFHFIRVCTIIKDLNEINPGWCLRYFAPDGECLKIKLHDCKCCYHTCQEPNKVIQSPKSNSNKSSQT