Scaffold Ga0071351_1025769

Overview

Basic Information

• Taxon OID: 3300005044
• Scaffold ID: Ga0071351_1025769
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0048
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1747
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.236
  • Depth (m): 2.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008991	Metagenome / Metatranscriptome	324	N
F010534	Metagenome / Metatranscriptome	302	N
F036561	Metagenome / Metatranscriptome	169	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0071351_10257691	F008991	N/A	MNLTVKITEQVEKKLEAVLKGTYDNRTIWMYYKVSLQILRDIIEDLIACHHTTHSLAEKDLYYEQNKVQIVDWIQWIQNRISSDKLVDLDRLLSKLIKDKAENLVEALTEENPSDRMTTLSMLQMSIQIALFMEIQQLLRSPIVIQFCEENGWTV*
Ga0071351_10257692	F010534	AGAAGG	MSDKVGEKQESIMNLIDQQIKGALKEQASRLEILQDRIKDAIDISATEHSQGIKQIMIFVTKAHVQAWIASLKHKIDTAGGNCEICDLEKVLGEESLEIAEAVKIALSNRNETTRNRILKELLEENSTKIEALSARVPQVTQP*
Ga0071351_10257695	F036561	N/A	RKEFRSLLASVEQTLSTSMRRVHRKVIELRRENSKISKEVLELEFDLERIREVVMSPNLEQMRTLIEDIYDWKVYRQSRSEKEIGNLQAIAVAEEKVDLPESLEIL*