Scaffold Ga0071351_1025001

Overview

Basic Information

• Taxon OID: 3300005044
• Scaffold ID: Ga0071351_1025001
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0048
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1277
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.236
  • Depth (m): 2.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007918	Metagenome / Metatranscriptome	342	Y
F008991	Metagenome / Metatranscriptome	324	N
F010534	Metagenome / Metatranscriptome	302	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0071351_10250011	F008991	AGG	MNLTVKITEQVEKKLEAVLKRRYDNKTIWMYYKVSLQLLRDIIENLIACHHTTYPLAEKDLYYEQNKVQIVDWIQWIQNRTSSDKLVDLDKLLSKLIKDKAENLVEALTEENPSDRMTTLSMLQ
Ga0071351_10250012	F010534	AGAAGG	MSDKVGEKQEAIMNLIDQQIKEALKDQASRLEILQDRIKDAIEVGTTEHSQGIKQVMLFVTKAHVQAWINSLKHKVDTAGDCEICDLEKILGEESLEIAEAVKVALSNRNEETRSRVLRGLLEKTTTKIEALSVRASQAPQP*
Ga0071351_10250013	F007918	N/A	MSETTVEESDPFRKQEIEEIKQELLSILANVESVTEAMSRAVLKEEDRREQFRTLCSLIDHSFGENIEMIEKRKDDLKEIDPSLQAIDCKLSTRMGRLRDVAIKPDLKSMKIEMEKVLSQQRTEKFQTNPQQEEQRPQKG*