Scaffold Ga0068513_1000421

Overview

Basic Information

• Taxon OID: 3300004951
• Scaffold ID: Ga0068513_1000421
• Source Dataset Name: Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-EVs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4292
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location

• Location Name: East Sea, Korea
• Coordinates
  • Lat. (^o): 37.0
  • Long. (^o): 131.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013634	Metagenome / Metatranscriptome	269	Y
F025485	Metagenome / Metatranscriptome	201	Y
F051709	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068513_10004213	F051709	N/A	MIPNKERLGLEVAIRPHIKTIDVIKSELQKVNGSIERKWRQLDDFSASWSYTIWSNWKDAMAGELSYREYLLIMLEVYQK*
Ga0068513_10004217	F025485	N/A	MENVRKLLPIIIGGIVAIALFLVSRKMRKGNQANSERSTILEKAREAKLAKSILRKSEEDDTESIAI*
Ga0068513_10004219	F013634	N/A	MCNSDNNEPMAIQLAPLVGAGLGALQQSKIEKALAGEKTYTKPKTIFGKLIGGVSGRTAAAEATATTKTAPLSDTVMNSLQPSAKSTPITGGFSFGGEATKKTYLPFYLGAIVLGIFFFMRRKGGRRRR*