Scaffold Ga0068513_1000224

Overview

Basic Information

• Taxon OID: 3300004951
• Scaffold ID: Ga0068513_1000224
• Source Dataset Name: Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-EVs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4876
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location

• Location Name: East Sea, Korea
• Coordinates
  • Lat. (^o): 37.0
  • Long. (^o): 131.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075433	Metagenome / Metatranscriptome	119	N
F083393	Metagenome / Metatranscriptome	113	Y
F106168	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068513_10002241	F075433	N/A	AFAQELRDLGVEDFVFAAGSSTGLLAIQYDGDPRGVCFLAMSALMNAMFESIDNTTGEVYHGGREDYSE*
Ga0068513_100022411	F083393	GGAG	MLNKVFKMADRHPIITLGVGTLGIMYLFEQYGPVNGLGNVYKDSGTPTDDMFRKTGHTGAPAPGTGRWDTVMPSPSGPQVRYDADYHTQPFMMDPELEKMLAERGPRPVRQPTSVRHGYEPTIFAGMKNVKMW*
Ga0068513_10002249	F106168	GAGG	MKITTKVKRIYKRNKALSLGLAAVGAYYLYTQRGMMAPALAPAPVKAQTAMAPTARYAYDAYPPVRNEPYYNSTHFFGPADGDPVFYGF*