Scaffold Ga0068514_1001650

Overview

Basic Information

• Taxon OID: 3300004941
• Scaffold ID: Ga0068514_1001650
• Source Dataset Name: Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2332
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location

• Location Name: South Korea: Pohang-si, Gyeongsangbuk-do
• Coordinates
  • Lat. (^o): 36.03776
  • Long. (^o): 129.386

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019396	Metagenome	230	Y
F026261	Metagenome / Metatranscriptome	198	Y
F048972	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068514_10016502	F019396	GGAG	LNSNWQPYLKLDPEGWPCMAQQTYEPLISEDGTTFCKNYNVDSEYQKMENKPRPFYTKEVVDWFFQNELTYLELFKDKKYAPEVKDIDYKNQKIYIKWYGKSCNQIINDPEIKEWPEYMWRRQIRDIIVDQYDEGVYKLTMYPHCHYITDTKQMKAIDWYGCVPIDDPFIEQKYMQGIIHDTAQFRLDETGEPIDDKVNLEIMFKRSLGEHVLWGDENMSYIYRELFGDG*
Ga0068514_10016503	F026261	GGA	MAKLVGTTKDIIDWDPIVDLCANCTTGDYNSVKTVVDRSEGNWRDNPELLGSYHDVINTWDEAGYNLDEIQWWDYYPGEHFDIEIQNKFAKIINAEPLRVFVSDVAPCNNVPYHWDVEDKEEEWLKLGELKRWVCFMDKPRWGNVLVLEEQAFHNVAQGEIWEWDSYRSHHAGTCMGVHHQYLFHFLGRPNK*
Ga0068514_10016504	F048972	AGG	MKHLGVCNTIDWDSVIEQCASVEPEFVGPSHKRGDTIPGLDPILDMWEEAGIKTVHEGGTAGWDMFIPGKQFEQSIVNAWNEFYGLDCKNVWISRIHPGRFAPIHWDVHDNEENIPDCPRYHCHIGSPQWGHIFIAGDETFYNIPQGTTYEWEDRKIWHAGTNCGLVPKYIWNAW*