Scaffold Ga0071103_111992

Overview

Basic Information

• Taxon OID: 3300004870
• Scaffold ID: Ga0071103_111992
• Source Dataset Name: Mid-Atlantic Ridge North Pond Expedition - Sample Bottom Water CTD 2012
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1344
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Abyssal Plane → Marine → Deep Marine Subsurface Microbial Communities From Mid-Atlantic Ridge (Iodp Expedition 336)

Source Dataset Sampling Location

• Location Name: North Pond, Atlantic Ocean
• Coordinates
  • Lat. (^o): 22.78
  • Long. (^o): -46.09
  • Depth (m): 4350

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002150	Metagenome	589	Y
F025299	Metagenome / Metatranscriptome	202	N
F045147	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0071103_1119922	F002150	AGGAG	MVSLTAAQVGVGVARKGKEKVGELYQEKFGYNFVDLVTKLALFYIVAFLIAKYMEAVIYFQGGLATIAGFFGIKFAQADQLPKQWVELFVDTNQQTFTSTPTAPGQFNPPGWDKPYDYGSVQHQEAEPYMFPQKEVKYKFWDLINAIVIFYIGWEAYKYYDNASKDPNKKVDLLTLAIFSLLMLAVGVLSFSKFLGRFSFNRFQEENK*
Ga0071103_1119923	F025299	AGG	MILEEIPFFTEFILLGIVLGFGYGFTKLFLNHARDKNKVRRSERKAKEANGLEDELDSYLNNAPQIAQKIQAELDYLKKNDATPEQMKSLESKLELLNKVQQYEIPLKLIGKPLFKKIVSIIDKVGV*
Ga0071103_1119924	F045147	N/A	QIKVNTSSGSGTYQCGLIPLFCYFGAAVPKTWTTSSVLLHIHADLAHAFPIFRDEDNMNMLDTGIGV*