Scaffold Ga0007759_11431011

Overview

Basic Information

• Taxon OID: 3300004836
• Scaffold ID: Ga0007759_11431011
• Source Dataset Name: Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 801
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051888	Metagenome / Metatranscriptome	143	Y
F067677	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007759_114310111	F067677	N/A	ALVLGEKSPSEKEITMNTFSFESARVNKVWDNKNRFNLGIQDSRAVAQPDGSFKSVFVASRIVTTSDPDHLDFIRKNLVDSDDCVVNIRGYMETKAGKKPGTWYDNMVITELTLA*
Ga0007759_114310112	F051888	N/A	MTSFALSSSTQSFSCSHENPATQLDTRDEYCAECRLLQEGSSVEHALNFQEINRSEQESEPAQSSDIPDEKGFNHQWTNRDGEYLEGVYDITNRLPSWLYLGKHVFPMFKQDELNAYLALPSTDTICILCHLQVNRFVGCQQCITP