Scaffold Ga0068515_101698

Overview

Basic Information

• Taxon OID: 3300004829
• Scaffold ID: Ga0068515_101698
• Source Dataset Name: Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2841
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location

• Location Name: South Korea: Pohang-si, Gyeongsangbuk-do
• Coordinates
  • Lat. (^o): 36.03776
  • Long. (^o): 129.386

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017933	Metagenome / Metatranscriptome	238	Y
F037479	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068515_1016981	F037479	N/A	MRFVGLYNFGGGGTEVITGVANDNLPSHTENVCYNEKTFFSGQFTNLSRELIHITLKGFGSTQTFHRHDLRAYESFTVKNVPIQSVSVFVTANQDIGFHGMGTLWEAEDEDEYAIMGAKSGMFEALPNSPQFNTDDYARVTVAAAGTGDLYVSGTDEDFALYKITISTDAAQVVDVFWTDSANANIEYIGNIRFGDEGTWVYDFDPAFLRNPNRQGGKLRYTTSTAANTTFDIIGHEVHAGQ*
Ga0068515_1016982	F017933	AGGA	MQEAILGISLVGFSTMISVLIYNSRKNDQLIRNLCERISKLEGMLEEKFKK*