Scaffold Ga0068515_100238

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0068515_100238

Scaffold Ga0068515_100238

Overview

Basic Information
Taxon OID	3300004829 Open in IMG/M
Scaffold ID	Ga0068515_100238 Open in IMG/M
Source Dataset Name	Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7523
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (84.62%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location
Location Name	South Korea: Pohang-si, Gyeongsangbuk-do
Coordinates	Lat. (^o)	36.03776	Long. (^o)	129.386	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004428	Metagenome / Metatranscriptome	438	Y
F041505	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068515_1002383	F041505	GGAG	MSEEQTIVINDEEHNVSELTVETQMHVARVAEIRQEIARLQMQINERQVVLNAYGEAIVNAVKPAEDQEPEAEVVQ*
Ga0068515_1002387	F004428	N/A	MLGEIAAIVAGVNAATSAIKQVAETTNDISSISSFLSTLGGAEVELQRAQNEGKLSEADAVKAALAKKQIQETMREIKDMFTVSGNGDLYQEAMSAMAEARKAKQQELARKAAAKKKFWKDVREVLTVIAVLLFLLPLTLAVLLTWLTA*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.