Scaffold Ga0007854_10000778

Overview

Basic Information

• Taxon OID: 3300004806
• Scaffold ID: Ga0007854_10000778
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20562
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (71.15%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019426	Metagenome	229	Y
F028070	Metagenome / Metatranscriptome	192	Y
F028168	Metagenome	192	Y
F041564	Metagenome / Metatranscriptome	159	Y
F042147	Metagenome / Metatranscriptome	158	Y
F064358	Metagenome / Metatranscriptome	128	Y
F071905	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007854_1000077810	F028070	GAG	MAIKYTVEMAKKIRGLKPPVRNLVLDVRARPNYLALTVYESNIMEYNESQRMQVMEYLLMVRKLIQSYGTPCEIEGMKYTDEQARKQRRQS*
Ga0007854_1000077814	F019426	AGGAG	MRVLVFGSKDWTDYNELIRQVTVLIDDRKHYYPDDKEYIFIHTGLRGAENMITEYIGKTEKFLRQKGYRIKEELVRDKSSFSNVTLIESNPDFALIFGESSRNKQCLALLQSYGVPFRDIKN*
Ga0007854_1000077817	F041564	AGCAG	MNYDPFNEEHKELMDYLISEGAAIIEGIDEYGEPVYRFDMEILEEVMPELHQVLVDDMDNILLDLYQKDLLEVSYDEELNAHMTVSEEGKRILEENGFDMGNSEDFGF*
Ga0007854_1000077837	F042147	AGGA	MLANGTIKTIEDEEDIYISLTSLCEYFTQSSVNMRKEIKHADPRDKRYAAGLYDMMHTIAEEVVELGKYEAQRRMINSPEDLLKMIDKNPFGKVE*
Ga0007854_1000077844	F071905	GGAG	MAKSTKLWENKDWVVKRYVTEKKSILDMAMEAKCSHMTIQRALERFGLIKQPRKWVKK*
Ga0007854_1000077848	F028168	AGG	LTEKATIDLISELTEFNDIKEYMNDKDLDYALDLIIKLIVKPDVPSSKAPDLIIKMQALAAKFAIMSRYYTTFEKGGENSKKKNVYYTAEEAINRLVDALKYSARYGA*
Ga0007854_100007788	F064358	AGAAG	MLCYSCGKQKNELQPKKSDIMDGVTLFMCQLCLDSKFEPRWVIILCGRQKGAESVRDYIIKRRYVGRTIDAEELIA*