Scaffold Ga0058863_10028202

Overview

Basic Information

• Taxon OID: 3300004799
• Scaffold ID: Ga0058863_10028202
• Source Dataset Name: Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2456
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Switchgrass Rhizosphere And Bulk Soil Microbial Communities From Kellogg Biological Station, Michigan, Usa For Expression Studies

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3912
  • Long. (^o): -85.383786

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022024	Metagenome / Metatranscriptome	216	Y
F031137	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0058863_100282022	F031137	GGA	MDHAQFKAKQTAAVYVADGLDEHTLEDFEMHMMGCRECVEDVESWRAIKLNIPARVRPARAPAVLGRSAQAAVGWRMAASLIVGGVLGTAGGWFGHESQAPNLDSTQTTFFNVPAATRSGGDCTALRLAPDTKFAVLRVPGVSRDRKVIAADAEKRELPASRYTSRLQPDGSHLVRIERQALESREVFLEARAADGFGEPLACVTGEVIADR*
Ga0058863_100282024	F022024	N/A	AAFREIADRPGSPVAAIVVASVPNKGEPTAGYPAAYDFRRIVRAIPIGNDDEPSPGISPAPPGLNLGAPSACVIGAGEPPAKYKLEQGSSNSTAILAGLLAGIWSSPRYAKLTPDEFLAGVVEGRMSKTARRSKPGARAPYLDGVPLADACLLATGRRSASVCRQPEAHREARP*