Scaffold Ga0068459_114716

Overview

Basic Information

• Taxon OID: 3300004791
• Scaffold ID: Ga0068459_114716
• Source Dataset Name: Porphyra umbilicalis microbial communities from the coast of Maine, USA, in Atlantic Ocean
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: HudsonAlpha Institute for Biotechnology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1281
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Coleoptera → Polyphaga → Cucujiformia → Tenebrionoidea → Tenebrionidae → Tenebrionidae incertae sedis → Tribolium → Tribolium castaneum (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Porphyra Umbilicalis → Porphyra Umbilicalis Symbiont Microbial Communities From The Coast Of Maine, Usa, In Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Trenton, Maine, United States
• Coordinates
  • Lat. (^o): 44.4
  • Long. (^o): -68.4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019271	Metagenome	230	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068459_1147161	F019271	GGA	VVIDADTDASTFVIDIDGEEKRVSSDHVTPAPRPTTTDTVPHPLLDGLDQRKPPPAAADEYVIDKLPGLRQTGDSYSGKVRWFDYGSKDDTWEPLENLPRNLVVRFLRQKKKHVPGYEWQTPTRRSRRQAGLTTVTNIVTDSTWIPTIQHVHVTGDGVIHADVSCTDSSTAAAIKEIIPVAWLKSTLPSMTRNFAYDPQLGWWHFPRLNRVYGPYTYVWPKSAQATLIGSDPSVPVLPNGFLLPPVQHLDSVLRRLVTTTAEETVVIPNWTNTSWYATAIRACFEYEVLLSADARCSTTI