NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0058858_1439266

Scaffold Ga0058858_1439266


Overview

Basic Information
Taxon OID3300004785 Open in IMG/M
Scaffold IDGa0058858_1439266 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-1 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)745
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Switchgrass Rhizosphere And Bulk Soil Microbial Communities From Kellogg Biological Station, Michigan, Usa For Expression Studies

Source Dataset Sampling Location
Location NameKellogg Biological Station, Michigan, USA
CoordinatesLat. (o)42.3912Long. (o)-85.383786Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015340Metagenome / Metatranscriptome255Y
F030100Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0058858_14392661F015340GGAVSLPGPQAGVRKRQLKRAQRPHSKFSVRKALIGPAMRPVTPLAVENGVGKLAA
Ga0058858_14392662F030100N/APELDERKTTVAPGIIPGDWGKVGPGWLAQPLSNEAARQSEGGRIHQFLWRRSRAVSQREKGTERPGAMRNRSELIQVVRESFGPG*

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