Scaffold Ga0007794_10009345

Overview

Basic Information

• Taxon OID: 3300004774
• Scaffold ID: Ga0007794_10009345
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA5M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2938
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012867	Metagenome	276	Y
F013086	Metagenome / Metatranscriptome	274	Y
F014736	Metagenome	260	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007794_100093456	F013086	N/A	MNEPELIGYTEREEGFYPLYAPPKGSIVTHAFILCKYCNVSISPCMGPKHDAVCLTCYEKDPDVR*
Ga0007794_100093458	F014736	GGAG	MNMPIVPDNVVKMWNDPRFEILAEVDKLLTGSKTWAGMEYTYHPIHPDKYKPVAVKVRQALDDLKKEYGVEE*
Ga0007794_100093459	F012867	GGAG	MKDFMYEQQRESITEDWGDEISQPLLSEKLNVPRVSYRIYYSNDNLTRRIFIFRGNCSQAETEIMLGLGFTFAKDGDTENIPDAQFN*