Scaffold Ga0007794_10006726

Overview

Basic Information

• Taxon OID: 3300004774
• Scaffold ID: Ga0007794_10006726
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA5M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3478
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F011761	Metagenome / Metatranscriptome	287	Y
F040626	Metagenome	161	Y
F058142	Metagenome / Metatranscriptome	135	Y
F058146	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007794_100067262	F040626	N/A	MALILTIDGLGKRYGMLPSEILKRSNTFDLYIMDAAMTFENYHHKKQMNNGREPMPDYTTDELQNIMDKVKGE*
Ga0007794_100067263	F058146	AGGA	MKLNSLTAKPQLVEIEINDDEVINEYGEAITFHTWDRQPLDVFMKLAAADHTNTVGVIGIVRTLILDEKGKEILKDDAMLPTNILMKAIGKVTELLGK*
Ga0007794_100067266	F058142	GGAG	MARTISYTVLNQPYTTQEQIIAVIRRDIPSTWNIPVFEDFPSESEKVRYGVYVSDVHQDDRNPHQLGVQYGGSIYHAYDTFSVTYISYQEDPYNQPVNAIIANLVTAVKDDGQQLFDGYFERDFTQVRTYGPTQAERHDWTFRVLRLEFNT*
Ga0007794_100067267	F002260	AGGA	MSVPYQRISNATVRDIQFYDPAAERRAAALNVDWEPYFKVGSQEWLYKLEFGWWQKYCDTVLGAYYYANLPNGQLISSFNPSLLIKNDQTLIRLDTFGAIQVFYESLVTDVSNMNEVDVQNYEFAVKRCENEWTKALQLMNFYDLYQDAPNGPTTKLEENWTADVDYFNGDRRYF*
Ga0007794_100067268	F011761	N/A	PTQGQTFLVPNFAPITYQDYNANGTGGTYGTGNAVVQNPALGQGSITATPAVAQTAFDIFYGWTTSFTLAATLGAELGESFAEKVDQRVTAAFLDFKATPQNIYYTQTPADGFARVLQLGAMEVIGATNTSGSWTQGFTCNSILDLIRLVKQNFKVARMPGTPVIVLDSNGDAQTQGGYTGGQVGSSLNRLLAELTGGAVSQSGGSNLSALGNELLSTGKIESVYGCMVMFTTFLQSASRTVVGQASLPVLVGAYFGDSALFTVMKEGLQIKTGEVPGGLQIWLTGVGYFGSGVGDLRRGGAINILQES*