Basic Information | |
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Taxon OID | 3300004774 Open in IMG/M |
Scaffold ID | Ga0007794_10006726 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA5M |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3478 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Crystal Bog, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002260 | Metagenome / Metatranscriptome | 577 | Y |
F011761 | Metagenome / Metatranscriptome | 287 | Y |
F040626 | Metagenome | 161 | Y |
F058142 | Metagenome / Metatranscriptome | 135 | Y |
F058146 | Metagenome | 135 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0007794_100067262 | F040626 | N/A | MALILTIDGLGKRYGMLPSEILKRSNTFDLYIMDAAMTFENYHHKKQMNNGREPMPDYTTDELQNIMDKVKGE* |
Ga0007794_100067263 | F058146 | AGGA | MKLNSLTAKPQLVEIEINDDEVINEYGEAITFHTWDRQPLDVFMKLAAADHTNTVGVIGIVRTLILDEKGKEILKDDAMLPTNILMKAIGKVTELLGK* |
Ga0007794_100067266 | F058142 | GGAG | MARTISYTVLNQPYTTQEQIIAVIRRDIPSTWNIPVFEDFPSESEKVRYGVYVSDVHQDDRNPHQLGVQYGGSIYHAYDTFSVTYISYQEDPYNQPVNAIIANLVTAVKDDGQQLFDGYFERDFTQVRTYGPTQAERHDWTFRVLRLEFNT* |
Ga0007794_100067267 | F002260 | AGGA | MSVPYQRISNATVRDIQFYDPAAERRAAALNVDWEPYFKVGSQEWLYKLEFGWWQKYCDTVLGAYYYANLPNGQLISSFNPSLLIKNDQTLIRLDTFGAIQVFYESLVTDVSNMNEVDVQNYEFAVKRCENEWTKALQLMNFYDLYQDAPNGPTTKLEENWTADVDYFNGDRRYF* |
Ga0007794_100067268 | F011761 | N/A | PTQGQTFLVPNFAPITYQDYNANGTGGTYGTGNAVVQNPALGQGSITATPAVAQTAFDIFYGWTTSFTLAATLGAELGESFAEKVDQRVTAAFLDFKATPQNIYYTQTPADGFARVLQLGAMEVIGATNTSGSWTQGFTCNSILDLIRLVKQNFKVARMPGTPVIVLDSNGDAQTQGGYTGGQVGSSLNRLLAELTGGAVSQSGGSNLSALGNELLSTGKIESVYGCMVMFTTFLQSASRTVVGQASLPVLVGAYFGDSALFTVMKEGLQIKTGEVPGGLQIWLTGVGYFGSGVGDLRRGGAINILQES* |
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