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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300004772 Open in IMG/M |
| Scaffold ID | Ga0007791_10012744 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0.5M |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3097 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (46.15%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Crystal Bog, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F030333 | Metagenome | 185 | Y |
| F034448 | Metagenome | 174 | Y |
| F040990 | Metagenome | 160 | Y |
| F089853 | Metagenome | 108 | Y |
| F100256 | Metagenome | 102 | Y |
| F104453 | Metagenome | 100 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0007791_1001274410 | F089853 | N/A | MKIASVMAPSPGDGHIAYRGWTPCIEWCDENCEGPWLFVSEGVFEFEWDSDYVLFMLRWA |
| Ga0007791_100127443 | F030333 | AGGTGG | MAIDRNPKLVIPVKTYTHYTECEPWCLANIGEWNIAWWKDFPDIAMSVALGEGPQPDCYWFEREQNALMFRLRFV* |
| Ga0007791_100127445 | F034448 | N/A | MYVNNYTLPRPAESVLDQCQLVVINDPAFRMWAMKKFCREQSLSLVWSELVETSDVSAYFDEAAAFYFIDPADATLFRLKYK* |
| Ga0007791_100127446 | F104453 | GGTGG | MSKNEYYTNTAARLDTIIGGDTEKFVRLKKCKEEWDRLADAVPVGQGFLTFNDYVREYYGIKLGVDSYTGGVQLDYNIIDDKKYTVFLLKFGQ* |
| Ga0007791_100127447 | F040990 | GAG | MNYYYEIDPKYDGTVFGDKWRYWCMYNCSPADNGKMCFKTHDDFMARSSRVWLENANGVYQVHPAWHGYRPVNSHEFTIVKLKAKTIKWWHDEQE* |
| Ga0007791_100127449 | F100256 | AGG | MIRVSTQDPAFNQAWAKAYRALPVINLEMPRQYGQRWREEYKCRVDGLDATGIGTHTYYVFDNDEDYTWFMLRWG* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |