Scaffold Ga0007745_1028558

Overview

Basic Information

• Taxon OID: 3300004765
• Scaffold ID: Ga0007745_1028558
• Source Dataset Name: Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2760
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005705	Metagenome / Metatranscriptome	392	Y
F009334	Metagenome / Metatranscriptome	319	Y
F045555	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007745_10285583	F005705	AGGAG	MKITIKLPKQVRAHIVLFCKDTPFKQKVVQSKVKFKRNPKHKGRNNG*
Ga0007745_10285587	F009334	AGGAG	MKTCMVHDVEVKVGDNVAFKSDIEQWARIIEIKKTYAGVALVLENKHGFSGDYIGGETITTRLATECWAD*
Ga0007745_10285588	F045555	AGGA	MTSIFIVRAEYRGAPESHIYGVYPTAKLALARIAVLEGEDFGYEITWYDEVKVGPEGADCEFANR*