Scaffold Ga0007746_1008746

Overview

Basic Information

• Taxon OID: 3300004763
• Scaffold ID: Ga0007746_1008746
• Source Dataset Name: Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2555
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006112	Metagenome / Metatranscriptome	381	Y
F075696	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007746_10087466	F006112	AGGAG	MKQDYTLYIYKADKRTKTGERLFSTTVWTGRDEAGMQREVEELHLHHYPRSQFRMEYCPTMKTVRNLMSGVEIQIAHDTPRSCDPSSELYWSM*
Ga0007746_10087469	F075696	AGGA	MQNTKSKLDSLMLQLQAVLEDAELGEHETIQNAFNALACALDEELIPV*