Scaffold Ga0065174_1046833

Overview

Basic Information

• Taxon OID: 3300004687
• Scaffold ID: Ga0065174_1046833
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Jul08 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 818
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009462	Metagenome / Metatranscriptome	317	Y
F026556	Metagenome / Metatranscriptome	197	Y
F067423	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065174_10468331	F067423	N/A	ETIEKVLNIPERDVILEAKHPKLKKMYDAYIKELSKYRMWEQIKGDNQ*
Ga0065174_10468332	F009462	AGGAG	MKSKLHESVRDTYTETVIKDDEGFRLVLKKHEVLSPKGLFSVDLIRQSFKDGELLDMSTYNFFMTKEEMQALAHGLTL*
Ga0065174_10468333	F026556	GGA	MTSALIRLIFGITLILIAIALGPILGIWALNTLFPVLHIPLTWETWAAFNILFGGSIATRLKK*